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FlexGraph: Flexible partitioning and storage for scalable graph mining

Publishing date: 2020-01-24 Published on: PLOS ONE summary: None authors: Chiwan Park, Ha-Myung Park, U. Kang link to paper: 10.1371/journal.pone.0227032 Icons made by catkuro from www.flaticon.com

Knowledge-guided analysis of omics data using the KnowEnG cloud platform

Publishing date: 2020-01-23 Published on: PLOS Biology summary: None authors: Charles Blatti III, Amin Emad, Matthew J. Berry, Lisa Gatzke, Milt Epstein, Daniel Lanier, Pramod Rizal, Jing Ge, Xiaoxia Liao, Omar Sobh, Mike Lambert, Corey S.

A network-centric approach for estimating trust between open source software developers

Publishing date: 2020-01-15 Published on: PLOS ONE summary: None authors: Hitesh Sapkota, Pradeep K. Murukannaiah, Yi Wang link to paper: 10.1371/journal.pone.0226281 Icons made by catkuro from www.flaticon.com

Assemblage of Focal Species Recognizers—AFSR: A technique for decreasing false indications of presence from acoustic automatic identification in a multiple species context

Publishing date: 2020-01-15 Published on: PLOS ONE summary: None authors: Ivan Braga Campos, Todd J. Landers, Kate D. Lee, William George Lee, Megan R. Friesen, Anne C. Gaskett, Louis Ranjard

Crossover interference and sex-specific genetic maps shape identical by descent sharing in close relatives

Publishing date: 2020-01-15 Published on: PLOS Genetics summary: None authors: Madison Caballero, Daniel N. Seidman, Ying Qiao, Jens Sannerud, Thomas D. Dyer, Donna M. Lehman, Joanne E. Curran, Ravindranath Duggirala, John Blangero, Shai Carmi, Amy L.

Diversity: Why open source needs to work on it in 2020 - TechRepublic

Publishing date: 2020-01-15 Published on: TechRepublic summary: This article discusses the current shortfalls of open source projects in inclusivity and diversity. In 2017 a GitHub open source survey found that 95% of respondents were male.

EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data

Publishing date: 2020-01-15 Published on: BMC Bioinformatics summary: This software article presents “https://github.com/MathOnco/EvoFreq">EvoFreq<, a comprehensive tool to visualise the evolutionary and population frequency dynamics of clones at a single point in time or as population frequencies over time using a variety of informative methods.

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Publishing date: 2020-01-15 Published on: PLOS ONE summary: Analysis of microbiome data involves identifying co-occurring groups of taxa associated with sample features of interest such as disease state. A key challenge in this is the composition and dimensionality of microbiome data.

Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

Publishing date: 2020-01-15 Published on: BMC Bioinformatics summary: None authors: Shifu Chen, Yanqing Zhou, Yaru Chen, Tanxiao Huang, Wenting Liao, Yun Xu, Zhicheng Li & Jia Gu link to paper: https://bmcbioinformatics.

ICE Contract With GitHub Sparks Developer Protests

Publishing date: 2020-01-15 Published on: The Atlantic summary: With 37 million users, GitHub is the largest host of source code in the world. Much of the code hosted on GitHub is open source, meaning it’s accessible, shareable, and modifiable to anyone.