Publishing date: 2020-08-18
Published on: PLOS Computational Biology
summary: In this software paper, Page et al develop ‘AlbaTraDIS’; a software application for rapid large-scale comparative analysis of TraDIS experiments that predicts the impact of transposon insertions on nearby genes.
Publishing date: 2020-08-18
Published on: PLOS Computational Biology
summary: bigPint is a software package for interactive and static data visualisation in R. It scales comfortably to large datasets, sporting graphs that include scatterplots, violin plots, and litre plots.
Publishing date: 2020-08-18
Published on: PLOS Computational Biology
summary: In this study, Butenko et al propose a new open-source simulation platform that comprises computer-aided design and computer-aided engineering tools for highly automated evaluation of electric field distribution and neural activation during Deep Brain Stimulation (DBS).
Publishing date: 2020-08-18
Published on: PLOS Computational Biology
summary: In this report, Zimin and Salzberg present the assembly polishing tool POLCA (POLishing by Calling Alternatives) and compare its performance with two other popular polishing programs, Pilon and Racon.
Publishing date: 2020-05-12
Published on: PLOS Computational Biology
summary: Channel Editor Summary: Have you ever wondered what proteins look like? In fact, accurately conceptualizing 3D protein structures is vital to both scientific research and education.
Publishing date: 2020-04-27
Published on: PLOS Computational Biology
summary: None
authors: Yuanchao Zhang, Man S. Kim, Erin R. Reichenberger, Ben Stear, Deanne M. Taylor
link to paper: 10.1371/journal.pcbi.1007794
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Publishing date: 2020-04-06
Published on: PLOS Computational Biology
summary: None
authors: Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi, Michael Holst, Padmini Rangamani
Publishing date: 2020-03-26
Published on: PLOS Computational Biology
summary: None
authors: Judit Kumuthini, Michael Chimenti, Sven Nahnsen, Alexander Peltzer, Rebone Meraba, Ross McFadyen, Gordon Wells, Deanne Taylor, Mark Maienschein-Cline, Jian-Liang Li, Jyothi Thimmapuram, Radha Murthy-Karuturi, Lyndon Zass
Publishing date: 2020-03-03
Published on: PLOS Computational Biology
summary: Ribosome profiling, an application of nucleic acid sequencing for monitoring ribosome activity, has revolutionized our understanding of protein translation dynamics. This technique has been available for a decade, yet the current state and standardization of publicly available computational tools for these data is bleak.
Publishing date: 2020-02-14
Published on: PLOS Computational Biology
summary: None
authors: Kosuke Hamazaki, Hiroyoshi Iwata
link to paper: 10.1371/journal.pcbi.1007663
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