Publishing date: 2020-02-05
Published on: PLOS Computational Biology
summary: None
authors: Manuel Stritt, Anna K. Stalder, Enrico Vezzali
link to paper: 10.1371/journal.pcbi.1007313
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Publishing date: 2020-01-15
Published on: PLOS Computational Biology
summary: None
authors: Bowen Li, Denis Taniguchi, Jayathilake Pahala Gedara, Valentina Gogulancea, Rebeca Gonzalez-Cabaleiro, Jinju Chen, Andrew Stephen McGough, Irina Dana Ofiteru, Thomas P.
Publishing date: 2020-01-15
Published on: PLOS Computational Biology
summary: Teaching well is a craft like any other, and success often comes from an accumulation of small improvements rather than from any single large change.
Publishing date: 2019-10-17
Published on: PLOS Computational Biology
summary: Almost half of the human genome is composed of transposable elements (TEs), but their contribution to the transcriptome, their cell-type specific expression patterns, and their role in disease remains poorly understood.
Publishing date: 2019-09-26
Published on: PLOS Computational Biology
summary: Open source projects are nothing but a collaborative effort of community members. The constant involvement of maintainers, contributors, and users make open source software sustainable and keeps the community as a whole going.
Publishing date: 2019-08-16
Published on: PLOS Computational Biology
summary: Traditionally, scholarly manuscripts have been written in private by a predefined team of collaborators. But now the internet enables realtime open science, where project communication occurs online in a public venue and anyone is able to contribute.
Publishing date: 2019-05-23
Published on: PLOS Computational Biology
summary: This paper presents Stytra, a flexible, open-source software package, written in Python and designed to cover all the general requirements involved in larval zebrafish behavioral experiments.
Publishing date: 2019-04-11
Published on: PLOS Computational Biology
summary: Interacting-particle reaction dynamics (iPRD) combines the simulation of dynamical trajectories of interacting particles as in molecular dynamics (MD) simulations with reaction kinetics, in which particles appear, disappear, or change their type and interactions based on a set of reaction rules.
Publishing date: 2019-02-27
Published on: PLOS Computational Biology
summary: Genome annotation is the process of identifying the location and function of a genome’s encoded features. Improving the biological accuracy of annotation is a complex and iterative process requiring researchers to review and incorporate multiple sources of information such as transcriptome alignments, predictive models based on sequence profiles, and comparisons to features found in related organisms.
Publishing date: 2019-02-27
Published on: PLOS Computational Biology
summary: Channel Editor Summary: BioJava is an open source project which provides a Java framework for processing biological data. The project offers analytical and statistical routines, parsers for common file formats, reference implementations of popular algorithms, and allows the manipulation of sequences and 3D structures.