Research Article

SAFE Acoustics: an open-source, real-time eco-acoustic monitoring network in the tropical rainforests of Borneo

Publishing date: 2020-04-03 Published on: bioRxiv summary: None authors: Sarab S. Sethi, Robert M. Ewers, Nick S. Jones, Aaron Signorelli, Lorenzo Picinali, C. David L. Orme link to paper: https://doi.org/10.1101/2020.02.27.968867

Multiple social platforms reveal actionable signals for software vulnerability awareness: A study of GitHub, Twitter and Reddit

Publishing date: 2020-03-24 Published on: PLOS ONE summary: None authors: Prasha Shrestha, Arun Sathanur, Suraj Maharjan, Emily Saldanha, Dustin Arendt, Svitlana Volkova link to paper: 10.1371/journal.pone.0230250 Icons made by catkuro from www.

A portable, low-cost device for precise control of specimen temperature under stereomicroscopes

Publishing date: 2020-03-11 Published on: PLOS ONE summary: None authors: Nicholas D. Testa, Samiksha Kaul, Kim N. Le, Mei Zhan, Hang Lu, Annalise B. Paaby link to paper: 10.1371/journal.pone.0230241 Icons made by catkuro from www.

BornAgain: software for simulating and fitting grazing-incidence small-angle scattering

Publishing date: 2020-03-03 Published on: Journal of Applied Crystallography summary: BornAgain is a free and open-source multi-platform software framework for simulating and fitting X-ray and neutron reflectometry, off-specular scattering, and grazing-incidence small-angle scattering (GISAS).

Compressive Big Data Analytics: An Ensemble Meta-Algorithm for High-dimensional Multisource Datasets

Publishing date: 2020-03-03 Published on: bioRxiv summary: None authors: Simeone Marino, Yi Zhao, Nina Zhou, Yiwang Zhou, Arthur Toga, Lu Zhao, Yingsi Jian, Yichen Yang, Yehu Chen, Qiucheng Wu, Jessica Wild, Brandon Cummings, Ivo D.

HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

Publishing date: 2020-03-03 Published on: GigaScience summary: Genome and proteome annotation pipelines are generally custom built and not easily reusable by other groups. This leads to duplication of effort, increased costs, and suboptimal annotation quality.

Metrics for graph comparison: A practitioner’s guide

Publishing date: 2020-03-03 Published on: PLOS ONE summary: Comparison of graph structure is a ubiquitous task in data analysis and machine learning, with diverse applications in fields such as neuroscience, cyber security, social network analysis, and bioinformatics.

Multi-template matching: a versatile tool for object-localization in microscopy images

Publishing date: 2020-03-03 Published on: BMC Bioinformatics summary: The localization of objects of interest is a key initial step in most image analysis workflows. For biomedical image data, classical image-segmentation methods like thresholding or edge detection are typically used.

PANEV: an R package for a pathway-based network visualization

Publishing date: 2020-03-03 Published on: BMC Bioinformatics summary: None authors: Valentino Palombo, Marco Milanesi, Gabriella Sferra, Stefano Capomaccio, Sandy Sgorlon & Mariasilvia D’Andrea link to paper: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3371-7 Icons made by catkuro from www.

pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage

Publishing date: 2020-03-03 Published on: PLOS ONE summary: Channel Editor Summary: Sometimes, all the available algorithms to perform a scientific task are either closed source, or just too complex to easily be re-used by others.